Aligning coding DNA in the presence of frame-shift errors

Author:

Arvestad Lars

Publisher

Springer Berlin Heidelberg

Reference15 articles.

1. K.-M. Chao. Computing all suboptimal alignments in linear space. In 5th Symposium on Combinatorial Pattern Matching, pages 31–42. Springer-Verlag LNCS 807, 1994.

2. M. O. Dayhoff, R. M. Schwartz, and B. C. Orcott. A model of evolutionary change in proteins. Atlas of Protein Sequence and Structure, 5:345–352, 1978. National Biomedical Research Foundation, Silver Spring, Maryland, USA.

3. O. Gotoh. An improved algorithm for matching biological sequences. Journal of Molecular Biology, 162:705–708, 1982.

4. X. Guan and E. C. Uberbacher. Alignments of DNA and protein sequences containing frameshift errors. Comp. Appl. Bio. Sci., 12(1):31–40, 1996.

5. J. Hein. An algorithm combining DNA and protein alignment. Journal of Theoretical Biology, 167:169–174, 1994.

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