CandiHap: a haplotype analysis toolkit for natural variation study-Reference-Cited by-同舟云学术

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CandiHap: a haplotype analysis toolkit for natural variation study

Published:2023-03 Issue:3 Volume:43 Page:
ISSN:1380-3743
Container-title:Molecular Breeding
language:en
Short-container-title:Mol Breeding

Author:

Li Xukai^ORCID,Shi Zhiyong,Gao Jianhua,Wang Xingchun,Guo Kai

Funder

National Key R&D Program of China

National Natural Science Foundation of China

Major Special Science and Technology Projects in Shanxi Province

National Laboratory of Minor Crops Germplasm Innovation and Molecular Breeding

Publisher

Springer Science and Business Media LLC

Subject

Plant Science,Genetics,Agronomy and Crop Science,Molecular Biology,Biotechnology

Link

https://link.springer.com/content/pdf/10.1007/s11032-023-01366-4.pdf

Reference33 articles.

1. Benner C, Spencer CC, Havulinna AS, Salomaa V, Ripatti S, Pirinen M (2016) FINEMAP: efficient variable selection using summary data from genome-wide association studies. Bioinformatics 32(10):1493–1501. https://doi.org/10.1093/bioinformatics/btw018

2. Cingolani P, Platts A, le Wang L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly (austin) 6(2):80–92. https://doi.org/10.4161/fly.19695

3. Gabriel SB, Schaffner SF, Nguyen H, Moore JM, Roy J, Blumenstiel B, Higgins J, DeFelice M, Lochner A, Faggart M, Liu-Cordero SN, Rotimi C, Adeyemo A, Cooper R, Ward R, Lander ES, Daly MJ, Altshuler D (2002) The structure of haplotype blocks in the human genome. Science 296(5576):2225–2229. https://doi.org/10.1126/science.1069424

4. Goodwin S, McPherson JD, McCombie WR (2016) Coming of age: ten years of next-generation sequencing technologies. Nat Rev Genet 17(6):333–351. https://doi.org/10.1038/nrg.2016.49

5. Hormozdiari F, Kostem E, Kang EY, Pasaniuc B, Eskin E (2014) Identifying causal variants at loci with multiple signals of association. Genetics 198(2):497–508. https://doi.org/10.1534/genetics.114.167908

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