Requirement or exclusion of inverted repeat sequences with cruciform-forming potential in Escherichia coli revealed by genome-wide analyses
Author:
Funder
JSPS KAKENHI
Publisher
Springer Science and Business Media LLC
Subject
Genetics,General Medicine
Link
http://link.springer.com/article/10.1007/s00294-018-0815-y/fulltext.html
Reference69 articles.
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2. Brázda V, Laister RC, Jagelská EB, Arrowsmith C (2011) Cruciform structures are a common DNA feature important for regulating biological processes. BMC Mol Biol 12:33. https://doi.org/10.1186/1471-2199-12-33
3. Brázda V, Coufal J, Liao JC, Arrowsmith C (2012) Preferential binding of IFI16 protein to cruciform structure and superhelical DNA. Biochem Biophys Res Commun 422:716–720. https://doi.org/10.1016/j.bbrc.2012.05.065
4. Brázda V, Kolomazník J, Lýsek J, Hároníková L, Coufal J, Št’astný J (2016) Palindrome analyser—a new web-based server for predicting and evaluating inverted repeats in nucleotide sequences. Biochem Biophys Res Commun 478:1739–1745. https://doi.org/10.1016/j.bbrc.2016.09.015
5. Cer RZ, Donohue DE, Mudunuri US, Temiz NA, Loss MA, Starner NJ, Halusa GN, Volfovsky N, Yi M, Luke BT et al (2013) Non-B DB v2.0: a database of predicted non-B DNA-forming motifs and its associated tools. Nucleic Acids Res 41:D94–D100. https://doi.org/10.1093/nar/gks955
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