Genotype calling and haplotype inference from low coverage sequence data in heterozygous plant genome using HetMap
Author:
Publisher
Springer Science and Business Media LLC
Subject
Genetics,Agronomy and Crop Science,General Medicine,Biotechnology
Link
https://link.springer.com/content/pdf/10.1007/s00122-022-04105-z.pdf
Reference26 articles.
1. Browning SR, Browning BL (2007) Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am J Hum Genet 81:1084–1097. https://doi.org/10.1086/521987
2. Chen M, Fan W, Ji F et al (2021) Genome-wide identification of agronomically important genes in outcrossing crops using Outcrossseq. Mol Plant 14:556–570. https://doi.org/10.1016/j.molp.2021.01.003
3. DePristo MA, Banks E, Poplin R et al (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat Genet 43:491–498. https://doi.org/10.1038/ng.806
4. Duvick DN (2001) Biotechnology in the 1930s: the development of hybrid maize. Nat Rev Genet 2:69–74. https://doi.org/10.1038/35047587
5. Flint J, Eskin E (2012) Genome-wide association studies in mice. Nat Rev Genet 13:807–817. https://doi.org/10.1038/nrg3335
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