SNP genotype calling and quality control for multi-batch-based studies-Reference-Cited by-同舟云学术

SNP genotype calling and quality control for multi-batch-based studies

Published:2019-05-06 Issue:8 Volume:41 Page:927-939
ISSN:1976-9571
Container-title:Genes & Genomics
language:en
Short-container-title:Genes Genom

Author:

Seo Sujin,Park Kyungtaek,Lee Jang Jae,Choi Kyu Yeong,Lee Kun Ho,Won Sungho^ORCID

Publisher

Springer Science and Business Media LLC

Subject

Genetics,Molecular Biology,Biochemistry

Link

http://link.springer.com/content/pdf/10.1007/s13258-019-00827-5.pdf

Reference22 articles.

1. Affymetrix I (2013) Axiom® genotyping solution data analysis guide. URL http://media.affymetrix.com/support/downloads/manuals/axiom_genotyping_solution_analysis_guide.pdf . Accessed 29 Mar 2016

2. Affymetrix I (2015) SNPolisher User Guide (Version 1.5.2), pp 1–104. https://tools.thermofisher.com/content/sfs/manuals/SNPolisher_User_Guide.pdf . Accessed 24 April 2017

3. Anderson CA, Pettersson FH, Clarke GM, Cardon LR, Morris AP, Zondervan KT (2010) Data quality control in genetic case-control association studies. Nat Protoc 5(9):1564–1573

4. Browning BL, Yu Z (2009) Simultaneous genotype calling and haplotype phasing improves genotype accuracy and reduces false-positive associations for genome-wide association studies. Am J Hum Genet 85(6):847–861

5. Cariaso M, Lennon G (2012) SNPedia: a wiki supporting personal genome annotation, interpretation and analysis. Nucl Acids Res 40(D1):D1308–D1312

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