The E-CELL project: Towards integrative simulation of cellular processes

Author:

Tomita Masaru,Hashimoto Kenta,Takahashi Koichi,Matsuzaki Yuri,Matsushima Ryo,Saito Kanako,Yugi Katsuyuki,Miyoshi Fumihiko,Nakano Hisako,Tanida Sakura,Saito Yusuke,Kawase Akiko,Watanabe Naoko,Simizu Thomas S.,Nakayama Yoichi

Publisher

Springer Science and Business Media LLC

Subject

Computer Networks and Communications,Hardware and Architecture,Theoretical Computer Science,Software

Reference26 articles.

1. Tomita, M., Hashimoto, K., Takahashi, K., Shimizu, T., Matsuzaki, Y., Miyoshi, F., Saito, K., Tanida, S., Yugi, K., Venter, J. C. and Hutchinson C., “E-CELL: Software environment for whole cell simulation,”Bioinformatics vol. 15,No. 1, 1999.

2. Arita, M., Hagiya, M. and Shiratori, T, “GEISHA SYSTEM: An Environment for Simulating Protein Interaction,” in Takagi, T., (ed),Proceedings, Genome Informatics Workshop 1994. Universal Academy Press, Tokyo, pp. 81–89, 1994.

3. Barshop, B. A., Wrenn, R. F. and Frieden, C., “Analysis of numerical methods for computer simulation of kinetic processes: development of KINSIM-a flexible, portable system,”Anal Biochem, 130, pp. 134–145, 1983.

4. Cornish-Bowden, A. and Hofmeyr, J. H., “MetaModel: a program for modeling and control analysis of metabolic pathways on the IBM PC and compatibles,”Comput. Appl. Biosci., 7, pp. 89–93, 1991.

5. Dang, Q. and Frieden, C., “New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM,”Trends. Biochem. Sci., 22(8), p. 317, 1997.

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