Epidemiological Surveillance and Typing Methods to Track Antibiotic Resistant Strains Using High Throughput Sequencing-Reference-Cited by-同舟云学术

Epidemiological Surveillance and Typing Methods to Track Antibiotic Resistant Strains Using High Throughput Sequencing

Published:2016-11-22 Issue: Volume: Page:331-356
ISSN:1064-3745
Container-title:Methods in Molecular Biology
language:
Short-container-title:

Author:

Machado Miguel Paulo,Ribeiro-Gonçalves Bruno,Silva Mickael,Ramirez Mário,Carriço João André

Publisher

Springer New York

Link

http://link.springer.com/content/pdf/10.1007/978-1-4939-6634-9_20

Reference41 articles.

1. Courvalin P (2016) Why is antibiotic resistance a deadly emerging disease? Clin Microbiol Infect

2. Struelens MJ (1996) Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems. Clin Microbiol Infect 2:2–11

3. Baggesen DL, Sorensen G, Nielsen EM et al (2010) Phage typing of Salmonella Typhimurium-is it still a useful tool for surveillance and outbreak investigation. Euro Surveill 15(4):19471

4. Maiden MC, Bygraves JA, Feil EJ et al (1998) Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95:3140–3145

5. Jolley KA, Maiden MCJ (2010) BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595

Cited by 9 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Antimicrobial Resistance in Rivers: A Review of the Genes Detected and New Challenges;Environmental Toxicology and Chemistry;2022-02-22

2. DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing;Microbial Genomics;2020-03-01

3. DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics;2019-05-06

4. Streptococcus pneumoniae Serotype 3 in Mexico (1994 to 2017): Decrease of the Unusual Clonal Complex 4909 Lineage following PCV13 Introduction;Journal of Clinical Microbiology;2019-01

5. A primer on microbial bioinformatics for nonbioinformaticians;Clinical Microbiology and Infection;2018-04