Genetic diversity, population structure analysis and codon substitutions of Indicine Badri cattle using ddRAD sequencing-Reference-Cited by-同舟云学术

Genetic diversity, population structure analysis and codon substitutions of Indicine Badri cattle using ddRAD sequencing

Published:2024-01-19 Issue:2 Volume:14 Page:
ISSN:2190-572X
Container-title:3 Biotech
language:en
Short-container-title:3 Biotech

Author:

Rahman Javid Ur^ORCID,Kumar Devendra,Singh Satya Pal,Shahi Bijendra Narayan,Ghosh Ashis Kumar,Kumar Anil,Dar Aashaq Hussain,Ahmad Sheikh Firdous,Pathak Abhishek,Verma Manish Kumar

Funder

National Agri-Food Biotechnology Institute

Indian Council of Agricultural Research

Publisher

Springer Science and Business Media LLC

Link

https://link.springer.com/content/pdf/10.1007/s13205-023-03894-4.pdf

Reference30 articles.

1. Chen X, Min D, Yasir TA, Hu YG (2012) Genetic diversity, population structure and linkage disequilibrium in elite Chinese winter wheat investigated with SSR markers. PLoS One 7:e44510. https://doi.org/10.1371/journal.pone.0044510

2. Cingolani P, Platts A, le Wang L, Coon M, Nguyen T, Wang L, Land SJ, Lu X, Ruden DM (2012) A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3. Fly 6(2):80–92. https://doi.org/10.4161/fly.19695

3. Dadi H, Lee SH, Jung KS, Choi JW, Ko MS, Han YJ, Kim JJ, Kim KS (2012) Effect of population reduction on mtDNA diversity and demographic history of Korean cattle populations. Asian-Australas J Anim Sci 25(9):1223–1228. https://doi.org/10.5713/ajas.2012.12122

4. Danecek P, Auton A, Abecasis G, Albers CA, Banks E, DePristo MA, Handsaker RE (2011) 1000 Genomes Project Analysis Group (2011), The variant call format and VCFtools. Bioinformatics 27(15):2156–2158. https://doi.org/10.1093/bioinformatics/btr330

5. Dar AH, Kumar S, Mukesh M, Ahmad SF, Singh DV, Sharma RK, Ghosh AK, Singh B, Rahman JU, Sodhi M (2020) Genetic characterization and population structure of different coat colour variants of Badri cattle. Mol Biol Rep. https://doi.org/10.1007/s11033-020-05890-w