A survey of genome sequence assembly techniques and algorithms using high-performance computing

Author:

Ahmed Munib,Ahmad Ishfaq,Ahmad Mohammad Saad

Publisher

Springer Science and Business Media LLC

Subject

Hardware and Architecture,Information Systems,Theoretical Computer Science,Software

Reference78 articles.

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2. Ahmed M, Ahmad I, Khan S (2011) A comparative analysis of approaches to parallel genome assembly. J Interdiscipl Sci Comput Life Sci 3:1–7. doi: 10.1007/s12539-011-00

3. Ahmed M, Ahmad M, Ahmad I (2008) A multi-pronged parallel approach to enhance speed and accuracy of sequence assembly. In: Biotechnology and bioinformatics symposium

4. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402

5. Aluru S, Futamura N, Mehrotra K (2003) Parallel biological sequence comparison using prefix computations. J Parallel Distrib Comput 63(3):264–272

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1. Supercomputing of reducing sequenced bases in de novo sequencing of the human genome;The Journal of Supercomputing;2022-04-08

2. References;Multiple Biological Sequence Alignment: Scoring Functions, Algorithms and Applications;2016-06-24

3. DNA Analysis: Principles and Sequencing Algorithms;Proceedings of the 8th International Joint Conference on Computational Intelligence;2016

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