An integrative protocol for one-step PCR amplicon library construction and accurate demultiplexing of pooled sequencing data-Reference-Cited by-同舟云学术

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An integrative protocol for one-step PCR amplicon library construction and accurate demultiplexing of pooled sequencing data

Published:2023-08-04 Issue:4 Volume:5 Page:564-572
ISSN:2662-1746
Container-title:Marine Life Science & Technology
language:en
Short-container-title:Mar Life Sci Technol

Author:

Ni Jiahao,Pan Jiao,Wang Yaohai,Chen Tianhao,Feng Xinshi,Li Yichen,Lin Tongtong,Lynch Michael,Long Hongan,Li Weiyi

Publisher

Springer Science and Business Media LLC

Subject

Aquatic Science,Ecology, Evolution, Behavior and Systematics,Oceanography,Biotechnology

Link

https://link.springer.com/content/pdf/10.1007/s42995-023-00182-1.pdf

Reference45 articles.

1. Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech XZ, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R (2017) Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2:e00191–16

2. Beser J, Hallström BM, Advani A, Andersson S, Östlund G, Winiecka-Krusnell J, Lebbad M, Alm E, Troell K, Arrighi RBG (2017) Improving the genotyping resolution of Cryptosporidium hominis subtype IbA10G2 using one step PCR-based amplicon sequencing. Infect Genet Evol 55:297–304

3. Bohmann K, Elbrecht V, Carøe C, Bista I, Leese F, Bunce M, Yu DW, Seymour M, Dumbrell AJ, Creer S (2022) Strategies for sample labelling and library preparation in DNA metabarcoding studies. Mol Ecol Resour 22:1231–1246

4. Bokulich NA, Kaehler BD, Rideout JR, Dillon M, Bolyen E, Knight R, Huttley GA, Caporaso JG (2018) Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin. Microbiome 6:90

5. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK et al (2019) Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37:852–857

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1. Special topic on EvoDevo: emerging models and perspectives;Marine Life Science & Technology;2023-11-22

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