Amplicon sequencing reveals different microbial communities in living poplar wetwood and sapwood-Reference-Cited by-同舟云学术

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Amplicon sequencing reveals different microbial communities in living poplar wetwood and sapwood

Published:2019-02-28 Issue:3 Volume:33 Page:851-865
ISSN:0931-1890
Container-title:Trees
language:en
Short-container-title:Trees

Author:

Yu Xiaoli,Hu Xingyi,Peng Yanjie,Wu Zhifang,Zhang Qilin,Li Zhenfang,Shi Chunmei,Du Kebing^ORCID

Funder

National Natural Science Foundation of China

Hubei Provincial Major Technological Innovation Foundation of China

Hubei Provincial Natural Science Foundation of China

Fundamental Research Funds for the Central Universities of China

Publisher

Springer Science and Business Media LLC

Subject

Plant Science,Ecology,Physiology,Forestry

Link

http://link.springer.com/article/10.1007/s00468-019-01822-9/fulltext.html

Reference54 articles.

1. Beckers B, Beeck MOD, Weyens N, Boerjan W, Vangronsveld J (2017) Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees. Microbiome 5:25. https://doi.org/10.1186/s40168-017-0241-2

2. Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R, Mills DA, Caporaso JG (2013) Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods 10(1):57–59. https://doi.org/10.1371/journal.pone.0066437

3. Brill H, Bock E, Bauch J (1981) Über die bedeutung von mikroorganismen im holz von Abies alba Mill. für das tannensterben. Forstwissenschaftliches Centralbltt 100(1):195–206. https://doi.org/10.1007/BF02640636

4. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Peňa AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336. https://doi.org/10.1038/nmeth.f.303

5. Caporaso JG, Lauber CL, Walters WA, Berg-Lyons D, Lozupone CA, Turnbaugh PJ, Fierer N, Knight R (2011) Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample. PNAS 108(1):4516–4522. https://doi.org/10.1073/pnas.1000080107

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