Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L-Reference-Cited by-同舟云学术

Blue Matter: Strong Scaling of Molecular Dynamics on Blue Gene/L

Published:2006 Issue: Volume: Page:846-854
ISSN:0302-9743
Container-title:Computational Science – ICCS 2006
language:
Short-container-title:

Author:

Fitch Blake G.,Rayshubskiy Aleksandr,Eleftheriou Maria,Ward T. J. Christopher,Giampapa Mark,Zhestkov Yuri,Pitman Michael C.,Suits Frank,Grossfield Alan,Pitera Jed,Swope William,Zhou Ruhong,Feller Scott,Germain Robert S.

Publisher

Springer Berlin Heidelberg

Link

http://link.springer.com/content/pdf/10.1007/11758525_113

Reference24 articles.

1. Fitch, B., Germain, R., Mendell, M., Pitera, J., Pitman, M., Rayshubskiy, A., Sham, Y., Suits, F., Swope, W., Ward, T., Zhestkov, Y., Zhou, R.: Blue Matter, an application framework for molecular simulation on Blue Gene. Journal of Parallel and Distributed Computing 63, 759–773 (2003)

2. Germain, R., Zhestkov, Y., Eleftheriou, M., Rayshubskiy, A., Suits, F., Ward, T., Fitch, B.: Early performance data on the Blue Matter molecular simulation framework. IBM Journal of Research and Development 49(2/3), 447–456 (2005)

3. Germain, R.S., Fitch, B., Rayshubskiy, A., Eleftheriou, M., Pitman, M.C., Suits, F., Giampapa, M., Ward, T.C.: Blue Matter on Blue Gene/L: massively parallel computation for biomolecular simulation. In: CODES+ISSS 2005: Proceedings of the 3rd IEEE/ACM/IFIP international conference on Hardware/software codesign and system synthesis, pp. 207–212. ACM Press, New York (2005)

4. Allen, F., et al.: Blue Gene: a vision for protein science using a petaflop supercomputer. IBM Systems Journal 40(2), 310–327 (2001)

5. Pitman, M.C., Grossfield, A., Suits, F., Feller, S.E.: Role of cholesterol and polyunsaturated chains in lipid-protein interactions: Molecular dynamics simulation of rhodopsin in a realistic membrane environment. Journal of the American Chemical Society 127(13), 4576–4577 (2005)

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