easyMF: A Web Platform for Matrix Factorization-Based Gene Discovery from Large-scale Transcriptome Data-Reference-Cited by-同舟云学术

登录注册会员服务联系我们

easyMF: A Web Platform for Matrix Factorization-Based Gene Discovery from Large-scale Transcriptome Data

Published:2022-05-18 Issue:3 Volume:14 Page:746-758
ISSN:1913-2751
Container-title:Interdisciplinary Sciences: Computational Life Sciences
language:en
Short-container-title:Interdiscip Sci Comput Life Sci

Author:

Ma Wenlong,Chen Siyuan,Qi Yuhong,Song Minggui,Zhai Jingjing,Zhang Ting,Xie Shang,Wang Guifeng,Ma Chuang^ORCID

Funder

National Natural Science Foundation of China

Youth 1000-Talent Program of China

Hundred Talents Program of Shaanxi Province of China

Projects of Youth Technology New Star of Shaanxi Province

Fundamental Research Funds for the Central Universities

Publisher

Springer Science and Business Media LLC

Subject

Health Informatics,Computer Science Applications,General Biochemistry, Genetics and Molecular Biology

Link

https://link.springer.com/content/pdf/10.1007/s12539-022-00522-2.pdf

Reference55 articles.

1. One Thousand Plant Transcriptomes Initiative (2019) One thousand plant transcriptomes and the phylogenomics of green plants. Nature 574:679–685. https://doi.org/10.1038/s41586-019-1693-2

2. Nelms B, Walbot V (2019) Defining the developmental program leading to meiosis in maize. Science 364:52–56. https://doi.org/10.1126/science.aav6428

3. Cardoso-Moreira M, Halbert J, Valloton D, Velten B, Chen C, Shao Y, Liechti A, Ascenção K, Rummel C, Ovchinnikova S, Mazin PV, Xenarios I, Harshman K, Mort M, Cooper DN, Sandi C, Soares MJ, Ferreira PG, Afonso S, Carneiro M, Turner JMA, VandeBerg JL, Fallahshahroudi A, Jensen P, Behr R, Lisgo S, Lindsay S, Khaitovich P, Huber W, Baker J, Anders S, Zhang YE, Kaessmann H (2019) Gene expression across mammalian organ development. Nature 571:505–509. https://doi.org/10.1038/s41586-019-1338-5

4. Sarropoulos I, Marin R, Cardoso-Moreira M, Kaessmann H (2019) Developmental dynamics of lncRNAs across mammalian organs and species. Nature 571:510–514. https://doi.org/10.1038/s41586-019-1341-x

5. Qiu Z, Chen S, Qi Y, Liu C, Zhai J, Xie S, Ma C (2021) Exploring transcriptional switches from pairwise, temporal and population RNA-Seq data using deepTS. Brief Bioinform. 22:bbaa137. https://doi.org/10.1093/bib/bbaa137

Cited by 5 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Integrative Approaches to Abiotic Stress Management in Crops: Combining Bioinformatics Educational Tools and Artificial Intelligence Applications;Sustainability;2024-09-03

2. Elucidating the impact of Y chromosome microdeletions and altered gene expression on male fertility in assisted reproduction;Human Molecular Genetics;2024-05-25

3. A review of artificial intelligence-assisted omics techniques in plant defense: current trends and future directions;Frontiers in Plant Science;2024-03-05

4. HetFCM: functional co-module discovery by heterogeneous network co-clustering;Nucleic Acids Research;2023-12-13

5. Machine learning bridges omics sciences and plant breeding;Trends in Plant Science;2023-02

同舟云学术

1.学者识别学者识别

2.学术分析学术分析

3.人才评估人才评估

"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370

www.globalauthorid.com

TOP

Copyright © 2019-2024 北京同舟云网络信息技术有限公司
京公网安备11010802033243号京ICP备18003416号-3