ProtPCV: A Fixed Dimensional Numerical Representation of Protein Sequence to Significantly Reduce Sequence Search Time
Author:
Publisher
Springer Science and Business Media LLC
Subject
Health Informatics,Computer Science Applications,General Biochemistry, Genetics and Molecular Biology
Link
http://link.springer.com/content/pdf/10.1007/s12539-020-00380-w.pdf
Reference39 articles.
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2. Vialle RA, Pedrosa FO, Weiss VA et al (2016) RAFTS3: rapid alignment-free tool for sequence similarity search. bioRxiv. https://doi.org/10.1101/055269
3. Lambert C, Campenhout JM, DeBolle X, Depiereux E (2003) Review of common sequence alignment methods: clues to enhance reliability. Curr Genom 4:131–146. https://doi.org/10.2174/1389202033350038
4. Vinga S, Almeida J (2003) Alignment-free sequence comparison—a review. Bioinform Oxf Engl 19:513–523. https://doi.org/10.1093/bioinformatics/btg005
5. Zielezinski A, Vinga S, Almeida J, Karlowski WM (2017) Alignment-free sequence comparison: benefits, applications, and tools. Genome Biol 18:186. https://doi.org/10.1186/s13059-017-1319-7
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