RNA Folding Based on 5 Beads Model and Multiscale Simulation-Reference-Cited by-同舟云学术

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RNA Folding Based on 5 Beads Model and Multiscale Simulation

Published:2023-04-28 Issue:3 Volume:15 Page:393-404
ISSN:1913-2751
Container-title:Interdisciplinary Sciences: Computational Life Sciences
language:en
Short-container-title:Interdiscip Sci Comput Life Sci

Author:

Zhang Dinglin^ORCID,Gong Lidong^ORCID,Weng Junben^ORCID,Li Yan^ORCID,Wang Anhui^ORCID,Li Guohui^ORCID

Funder

the National Key R&D Program of China

the National Natural Science Foundation of China

the Strategic Priority Research Program of Chinese Academy of Sciences

Postdoctoral Science Foundation of Jiangsu Province

Foundation of Liaoning Province Education Administration

Publisher

Springer Science and Business Media LLC

Subject

Health Informatics,Computer Science Applications,General Biochemistry, Genetics and Molecular Biology

Link

https://link.springer.com/content/pdf/10.1007/s12539-023-00561-3.pdf

Reference54 articles.

1. Murray LJW, Arendall WB, Richardson DC, Richardson JS (2003) RNA backbone is rotameric. P Natl Acad Sci USA 100:13904–13909. https://doi.org/10.1073/pnas.1835769100

2. Hershkovitz E, Sapiro G, Tannenbaum A, Williams LD (2006) Statistical analysis of RNA backbone. Ieee Acm T Comput Bi 3:33–46. https://doi.org/10.1109/TCBB.2006.13

3. Tinoco I, Bustamante C (1999) How RNA folds. J Mol Biol 293:271–281. https://doi.org/10.1006/jmbi.1999.3001

4. Kuhrova P, Best RB, Bottaro S, Bussi G, Sponer J, Otyepka M et al (2016) Computer Folding of RNA Tetraloops: Identification of Key Force Field Deficiencies. J Chem Theory Comput 12:4534–4548. https://doi.org/10.1021/acs.jctc.6b00300

5. Duan Q, Tao P, Wang J, Xiao Y (2020) Molecular dynamics study of ways of RNA base-pair formation. Phys Rev 102:032403. https://doi.org/10.1103/PhysRevE.102.032403

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