Protein Multiple Conformation Prediction Using Multi-Objective Evolution Algorithm-Reference-Cited by-同舟云学术

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Protein Multiple Conformation Prediction Using Multi-Objective Evolution Algorithm

Published:2024-01-08 Issue: Volume: Page:
ISSN:1913-2751
Container-title:Interdisciplinary Sciences: Computational Life Sciences
language:en
Short-container-title:Interdiscip Sci Comput Life Sci

Author:

Hou Minghua,Jin Sirong,Cui Xinyue,Peng Chunxiang,Zhao Kailong,Song Le,Zhang Guijun

Funder

National Key R&D Program of China

National Nature Science Foundation of China

Key Project of Zhejiang Provincial Natural Science Foundation of China

Publisher

Springer Science and Business Media LLC

Link

https://link.springer.com/content/pdf/10.1007/s12539-023-00597-5.pdf

Reference47 articles.

1. Jumper J, Evans R, Pritzel A et al (2021) Highly accurate protein structure prediction with AlphaFold. Nature 596:583–589. https://doi.org/10.1038/s41586-021-03819-2

2. Subramaniam S, Kleywegt GJ (2022) A paradigm shift in structural biology. Nat Methods 19:20–23. https://doi.org/10.1038/s41592-021-01361-7

3. Jones DT, Thornton JM (2022) The impact of AlphaFold2 one year on. Nat Methods 19:15–20. https://doi.org/10.1038/s41592-021-01365-3

4. Varadi M, Anyango S, Deshpande M et al (2022) AlphaFold protein structure database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids Res 50:D439–D444. https://doi.org/10.1093/nar/gkab1061

5. Henzler-Wildman KA, Thai V, Lei M et al (2007) Intrinsic motions along an enzymatic reaction trajectory. Nature 450:838–844. https://doi.org/10.1038/nature06410

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1. Predicting protein conformational motions using energetic frustration analysis and AlphaFold2;Proceedings of the National Academy of Sciences;2024-08-20

2. Apprehensions and emerging solutions in ML-based protein structure prediction;Current Opinion in Structural Biology;2024-06

3. Selection of a promiscuous minimalist cAMP phosphodiesterase from a library of de novo designed proteins;Nature Chemistry;2024-05-03

4. Recent Progress of Protein Tertiary Structure Prediction;Molecules;2024-02-13

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