Protein structure optimization by side-chain positioning via beta-complex-Reference-Cited by-同舟云学术

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Protein structure optimization by side-chain positioning via beta-complex

Published:2012-03-23 Issue:1 Volume:57 Page:217-250
ISSN:0925-5001
Container-title:Journal of Global Optimization
language:en
Short-container-title:J Glob Optim

Author:

Ryu Joonghyun,Kim Deok-Soo

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Management Science and Operations Research,Control and Optimization,Computer Science Applications

Link

http://link.springer.com/content/pdf/10.1007/s10898-012-9886-3.pdf

Reference68 articles.

1. Althaus, E., Kohlbacher, O., Lenhof, H.P., Müller, P.: A combinatorial approach to protein docking with flexible side-chains. In: RECOMB ’00 Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, pp. 15–24 (2000)

2. Althaus E., Kohlbacher O., Lenhof H.P., Müller P.: A combinatorial approach to protein docking with flexible side chains. J. Comput. Biol. 9(4), 597–612 (2002)

3. Pierce N., Winfree E.: Protein design is NP-hard. Protein Eng. 15(10), 779–782 (2002)

4. Bondi A.: van der Waals volumes and radii. J. Phys. Chem. 68, 441–451 (1964)

5. Brooks B.R., Bruccoleri R.E., Olafson B.D., States D.J., Swaminathan S., Karplus M.: CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comput. Chem. 4(2), 187–217 (1983)

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