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Effects of Fractionation Methods on Soil Aggregate Microbial Community Composition: Settling vs. Wet Sieving

  • Published:2024-01-12 Issue:1 Volume:24 Page:1160-1171
  • ISSN:0718-9508
  • Container-title:Journal of Soil Science and Plant Nutrition
  • language:en
  • Short-container-title:J Soil Sci Plant Nutr

Author:

Gao Xin,Wang Rui,Hu Yaxian,Li Weijia,Du Lanlan,Guo Shengli,Wu Shengjun,Huang Ping

Funder

National Natural Sciences Foundation of China

Chinese Scholarship Council

Publisher

Springer Science and Business Media LLC

Reference44 articles.

1. Almajmaie A, Hardie M, Acuna T, Birch C (2017) Evaluation of methods for determining soil aggregate stability. Soil Tillage Res 167:39–45. https://doi.org/10.1016/j.still.2016.11.003

2. Bach EM, Hofmockel KS (2014) Soil aggregate isolation method affects measures of intra-aggregate extracellular enzyme activity. Soil Biol Biochem 69:54–62. https://doi.org/10.1016/j.soilbio.2013.10.033

3. Bach EM, Williams RJ, Hargreaves SK, Yang F, Hofmockel KS (2018) Greatest soil microbial diversity found in micro-habitats. Soil Biol Biochem 118:217–226. https://doi.org/10.1016/j.soilbio.2017.12.018

4. Blaud A, Menon M, van der Zaan B, Lair GJ, Banwart SA (2017) Effects of Dry and Wet Sieving of Soil on Identification and Interpretation of Microbial Community Composition, in: advances in Agronomy. Academic Press Inc., pp 119–142. https://doi.org/10.1016/bs.agron.2016.10.006

5. Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, bin Kang K, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu Y-X, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik Av, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Williamson AD, Xu ZZ Zaneveld, J.R., Zhang, Y., Zhu, Q., Knight, R., Caporaso, J.G., 2019. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat Biotechnol 37, 852–857

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