Theoretical study of a proton wire mechanism for the peptide bond formation in the ribosome
Author:
Publisher
Springer Science and Business Media LLC
Subject
Physical and Theoretical Chemistry
Link
http://link.springer.com/content/pdf/10.1007/s00214-017-2066-2.pdf
Reference42 articles.
1. Schmeing TM, Huang KS, Kitchen DE, Strobel SA, Steitz TA (2005) Structural insights into the roles of water and the 2′ hydroxyl of the P site tRNA in the peptidyl transferase reaction. Mol Cell 20:437–448
2. Weinger JS, Parnell KM, Dorner S, Green R, Strobel SA (2004) Substrate-assisted catalysis of peptide bond formation by the ribosome. Nat Struct Mol Biol 11:1101–1106
3. Koch M, Huang Y, Sprinzl M (2008) Peptide-bond synthesis on the ribosome: no free vicinal hydroxy group required on the terminal ribose residue of peptidyl-tRNA. Angew Chem Int Ed 47:7242–7245
4. Huang Y, Sprinzl M (2011) Peptide bond formation on the ribosome: the role of the 2′-OH group on the terminal adenosine of peptidyl-tRNA and of the length of nascent peptide chain. Angew Chem Int Ed 50:7287–7289
5. Zaher HS, Shaw JJ, Strobel SA, Green R (2011) The 2′-OH group of the peptidyl-tRNA stabilizes an active conformation of the ribosomal PTC. EMBO J 30:2445–2453
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1. Theoretical Study of the Mechanism of Ribosomal Peptide Bond Formation Using the ONIOM Method;Chemical and Pharmaceutical Bulletin;2021-08-01
2. Quantum mechanical tunnelling through the catalytic effects of A2451 ribosomal residue during a stepwise peptide bond formation;Biochemistry and Cell Biology;2019-08
3. RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview;Chemical Reviews;2018-01-03
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