Efficient Bubble Enumeration in Directed Graphs-Reference-Cited by-同舟云学术

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Efficient Bubble Enumeration in Directed Graphs

Published:2012 Issue: Volume: Page:118-129
ISSN:0302-9743
Container-title:String Processing and Information Retrieval
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Author:

Birmelé Etienne,Crescenzi Pierluigi,Ferreira Rui,Grossi Roberto,Lacroix Vincent,Marino Andrea,Pisanti Nadia,Sacomoto Gustavo,Sagot Marie-France

Publisher

Springer Berlin Heidelberg

Link

http://link.springer.com/content/pdf/10.1007/978-3-642-34109-0_13.pdf

Reference12 articles.

1. Robertson, G., et al.: De novo assembly and analysis of RNA-seq data. Nature Methods 7(11), 909–912 (2010)

2. Sacomoto, G., et al.: KisSplice: de-novo calling alternative splicing events from rna-seq data. In: RECOMB-Seq, BMC Bioinformatics (2012)

3. Simpson, J.T., et al.: ABySS: A parallel assembler for short read sequence data. Genome Research 19(6), 1117–1123 (2009)

4. Lecture Notes in Computer Science;P. Peterlongo,2010

5. Gusfield, D., Eddhu, S., Langley, C.H.: Optimal, efficient reconstruction of phylogenetic networks with constrained recombination. J. Bioinf. and Comput. Biol. 2(1), 173–214 (2004)

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2. Variable-order reference-free variant discovery with the Burrows-Wheeler Transform;BMC Bioinformatics;2020-09

3. A Family of Tree-Based Generators for Bubbles in Directed Graphs;Lecture Notes in Computer Science;2020

4. On Bubble Generators in Directed Graphs;Algorithmica;2019-08-31

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