A novel deep contrastive convolutional autoencoder based binning approach for taxonomic independent metagenomics data

Author:

Madival Sharanbasappa D.,Jha Girish Kumar,Mishra Dwijesh ChandraORCID,Kumar Sunil,Budhlakoti Neeraj,Sharma Anu,Chaturvedi Krishna Kumar,Kabilan S.,Farooqi Mohammad Samir,Srivastava Sudhir

Publisher

Springer Science and Business Media LLC

Reference19 articles.

1. Abadi M (2016) TensorFlow: learning functions at scale. In Proceedings of the 21st ACM SIGPLAN International Conference on Functional Programming, 1–1

2. Aggarwal D, Sharma D (2019) Application of clustering for student result analysis. Int J Recent Technol Eng 7(6):50–53

3. Cao Z, Li X, Zhao L (2020) Unsupervised feature learning by autoencoder and prototypical contrastive learning for hyperspectral classification. arXiv preprint arXiv:2009.00953.

4. Handelsman J (2004) Metagenomics: application of genomics to uncultured microorganisms. Microbiol Mol Biol Rev 68(4):669–685

5. Herath D, Tang SL, Tandon K, Ackland D, Halgamuge SK (2017) CoMet: a workflow using contig coverage and composition for binning a metagenomic sample with high Precision. BMC Bioinformatics 18(16):161–172

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