Funder
Russian Science Foundation
Publisher
Springer Science and Business Media LLC
Subject
Computational Theory and Mathematics,Inorganic Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Computer Science Applications,Catalysis
Reference95 articles.
1. Appendices A, B, and C in file sugarDNASM.pdf
2. see files A-DNA.mp4 and B-DNA.mp4 for short parts of the A-DNA and B-DNA trajectories,file A-to-B-2ns.mp4 for A to B transition (the length of the trajectory is 2 ns), and file B-to-A-6ns.mp4 for B to A transition (6 ns); the visualization was made with VMD support. VMD ( http://www.ks.uiuc.edu/Research/vmd/ ) is developed with NIH support by the Theoretical and Computational Biophysics group at the Beckman Institute, University of Illinois at Urbana-Champaign
3. Andrews A, Rottler J, Plotkin S (2010) A systematically coarse-grained model for DNA and its predictions for persistence length, stacking, twist, and chirality. J Chem Phys 132(3):035105. doi: 10.1063/1.3269994
4. Ȧqvist J (1990) Ion-water interaction potentials derived from free energy perturbation simulations. J Phys Chem 94(21):8021–8024. doi: 10.1021/j100384a009
5. Arnott S (2006) Historical article: DNA polymorphism and the early history of the double helix. Trends Biochem Sci 31(6):349–354. doi: 10.1016/j.tibs.2006.04.004
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