Automatic prediction of flexible regions improves the accuracy of protein-protein docking models-Reference-Cited by-同舟云学术

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Automatic prediction of flexible regions improves the accuracy of protein-protein docking models

Published:2011-09-27 Issue:5 Volume:18 Page:2199-2208
ISSN:1610-2940
Container-title:Journal of Molecular Modeling
language:en
Short-container-title:J Mol Model

Author:

Luo Xiaohu,Lü Qiang,Wu Hongjie,Yang Lingyun,Huang Xu,Qian Peide,Fu Gang

Publisher

Springer Science and Business Media LLC

Subject

Computational Theory and Mathematics,Inorganic Chemistry,Organic Chemistry,Physical and Theoretical Chemistry,Computer Science Applications,Catalysis

Link

http://link.springer.com/content/pdf/10.1007/s00894-011-1231-0.pdf

Reference27 articles.

1. Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403:623–627

2. Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415:141–147

3. Berman HM, Bhat TN, Bourne PE, Feng Z, Gilliland G, Weissig H, Westbrook J (200) The Protein Data Bank and the challenge of structural genomics. Nat Struct Biol 7:957–959

4. Anfinsen CB (1973) Principles that govern the folding of protein chains. Science 181:223–230

5. Katchalski-Katzir E, Shariv I, Eisenstein M, Friesem A, Aflalo C, Vakser I (1992) Molecular surface recognition: determination of geometric fit between protein and their ligands by correlation techniques. Proc Natl Acad Sci USA 89:2195–2199

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3. Improvements, trends, and new ideas in molecular docking: 2012-2013 in review;Journal of Molecular Recognition;2015-03-21

4. PaFlexPepDock: Parallel Ab-Initio Docking of Peptides onto Their Receptors with Full Flexibility Based on Rosetta;PLoS ONE;2014-05-06

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