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Omics in gut microbiome analysis

Published:2021-02-23 Issue:3 Volume:59 Page:292-297
ISSN:1225-8873
Container-title:Journal of Microbiology
language:en
Short-container-title:J Microbiol.

Author:

Whon Tae Woong,Shin Na-Ri,Kim Joon Yong,Roh Seong Woon

Publisher

Springer Science and Business Media LLC

Subject

Applied Microbiology and Biotechnology,General Medicine,Microbiology

Link

http://link.springer.com/content/pdf/10.1007/s12275-021-1004-0.pdf

Reference53 articles.

1. Almeida, A., Nayfach, S., Boland, M., Strozzi, F., Beracochea, M., Shi, Z.J., Pollard, K.S., Sakharova, E., Parks, D.H., Hugenholtz, P., et al. 2020. A unified catalog of 204,938 reference genomes from the human gut microbiome. Nat. Biotechnol. 39, 105–114.

2. Amann, R.I., Ludwig, W., and Schleifer, K.H. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59, 143–169.

3. Aryal, S., Alimadadi, A., Manandhar, I., Joe, B., and Cheng, X. 2020. Machine learning strategy for gut microbiome-based diagnostic screening of cardiovascular disease. Hypertension 76, 1555–1562.

4. Bolyen, E., Rideout, J.R., Dillon, M.R., Bokulich, N.A., Abnet, C.C., Al-Ghalith, G.A., Alexander, H., Alm, E.J., Arumugam, M., Asnicar, F., et al. 2019. Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2. Nat. Biotechnol. 37, 852–857.

5. Bushman, F.D., Conrad, M., Ren, Y., Zhao, C.Y., Gu, C., Petucci, C., Kim, M.S., Abbas, A., Downes, K.J., Devas, N., et al. 2020. Multiomic analysis of the interaction between Clostridioides difficile infection and pediatric inflammatory bowel disease. Cell Host Microbe 28, 422–433.

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