Signed rearrangement distances considering repeated genes, intergenic regions, and indels-Reference-Cited by-同舟云学术

Signed rearrangement distances considering repeated genes, intergenic regions, and indels

Published:2023-09 Issue:2 Volume:46 Page:
ISSN:1382-6905
Container-title:Journal of Combinatorial Optimization
language:en
Short-container-title:J Comb Optim

Author:

Siqueira Gabriel^ORCID,Alexandrino Alexsandro Oliveira^ORCID,Dias Zanoni^ORCID

Funder

Conselho Nacional de Desenvolvimento Científico e Tecnológico

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior

Fundação de Amparo à Pesquisa do Estado de São Paulo

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Control and Optimization,Discrete Mathematics and Combinatorics,Computer Science Applications

Link

https://link.springer.com/content/pdf/10.1007/s10878-023-01083-w.pdf

Reference20 articles.

1. Alexandrino AO, Brito KL, Oliveira AR, Dias U, Dias Z (2021a) Reversal distance on genomes with different gene content and intergenic regions information. In: Algorithms for computational biology, vol 12715. Springer, Berlin, pp 121–133

2. Alexandrino AO, Oliveira AR, Dias U, Dias Z (2021b) Genome rearrangement distance with reversals, transpositions, and indels. J Comput Biol 28(3):235–247

3. Alexandrino AO, Oliveira AR, Dias U, Dias Z (2021c) Incorporating intergenic regions into reversal and transposition distances with indels. J Bioinform Comput Biol 19(06):2140011

4. Biller P, Guéguen L, Knibbe C, Tannier E (2016a) Breaking good: accounting for fragility of genomic regions in rearrangement distance estimation. Genome Biol Evol 8(5):1427–1439

5. Biller P, Knibbe C, Beslon G, Tannier E (2016b) Comparative genomics on artificial life. In: Pursuit of the universal. Springer, Berlin, pp. 35–44