Sublinear time width-bounded separators and their application to the protein side-chain packing problem

Author:

Fu Bin,Chen Zhixiang

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Computational Theory and Mathematics,Control and Optimization,Discrete Mathematics and Combinatorics,Computer Science Applications

Reference27 articles.

1. Akutsu T (1997) NP-hardness results for protein side-chain packing. In: Miyano S, Takagi T (eds) Genome informatics, vol 9, pp 180–186

2. Alon PN, Thomas R (1990) Planar separator. SIAM J Discret Math 7,2:184–193

3. Alon N, Seymour P, Thomas R (1990) A separator theorem for graphs with an excluded minor and its applications. In: Proceedings of the 22nd annual ACM symposium on theory of computing. ACM, New York, pp 293–299

4. Canutescu AA, Shelenkov AA, Dunbrack RL Jr (2003) A graph-theory algorithm for rapid protein side-chain prediction. Protein Sci 12:2001–2014

5. Chazelle B, Kingsford C, Singh M (2004) A semidefinite programming approach to side-chain positioning with new rounding strategies. INFORMS J Comput 16:86–94

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