Evolutionary insights from suffix array-based genome sequence analysis

Author:

Poddar Anindya,Chandra Nagasuma,Ganapathiraju Madhavi,Sekar K.,Klein-Seetharaman Judith,Reddy Raj,Balakrishnan N.

Publisher

Springer Science and Business Media LLC

Subject

General Agricultural and Biological Sciences,General Biochemistry, Genetics and Molecular Biology,General Medicine

Reference29 articles.

1. Abouelhoda M I, Kurtz S and Ohlebusch E 2002 The enhanced suffix array and its applications to genome analysis; Proceedings of the Second Workshop on Algorithms in Bioinformatics, September 17–21 (Springer-Verlag) pp 449–463

2. Arimura J, Asaka H, Sakamoto H, Arikawa S 2001 Efficient discovery of proximity patterns using suffix arrays; July 1–4, Jerusalem, Israel

3. Bejerano G and Yona G 2001 Variations on probabilistic suffix trees: statistical modeling and prediction of protein families; Bioinformatics 17 23–43

4. Beuhler E C and Ungar L H 2001 Maximum entropy methods for biological sequence modeling; in Workshop on Data Mining in Bioinformatics 2001 (BIOKDD 2001) pp 60–64

5. Bieganski P, Riedl J, Carlis J Retzel E F 1994 Generalized Suffix Trees for Biological Sequence Data. 1994 System Sciences V: Biotechnology Computing; in Proceedings of the Twenty-Seventh Hawaii International Conference, University of Minnesota, vol 5, pp 35–44

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