Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins-Reference-Cited by-同舟云学术

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Quantum Mechanical and Molecular Mechanics Modeling of Membrane-Embedded Rhodopsins

Published:2019-09-30 Issue:4-5 Volume:252 Page:425-449
ISSN:0022-2631
Container-title:The Journal of Membrane Biology
language:en
Short-container-title:J Membrane Biol

Author:

Ryazantsev Mikhail N.,Nikolaev Dmitrii M.,Struts Andrey V.,Brown Michael F.^ORCID

Funder

National Institutes of Health

National Science Foundation

Российский Фонд Фундаментальных Исследований

Skolkovo Institute of Science and Technology

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Physiology,Biophysics

Link

http://link.springer.com/content/pdf/10.1007/s00232-019-00095-0.pdf

Reference256 articles.

1. Ahuja S, Crocker E, Eilers M, Hornak V, Hirshfeld A, Ziliox M, Syrett N, Reeves PJ, Khorana HG, Sheves M, Smith SO (2009a) Location of the retinal chromophore in the activated state of rhodopsin. J Biol Chem 284:10190–10201

2. Ahuja S, Hornak V, Yan EC, Syrett N, Goncalves JA, Hirshfeld A, Ziliox M, Sakmar TP, Sheves M, Reeves PJ, Smith SO, Eilers M (2009b) Helix movement is coupled to displacement of the second extracellular loop in rhodopsin activation. Nat Struct Mol Biol 16:168–175

3. Alford RF, Leaver-Fay A, Jeliazkov JR, O’Meara MJ, DiMaio FP, Park H, Shapovalov MV, Renfrew PD, Mulligan VK, Kappel K, Labonte JW, Pacella MS, Bonneau R, Bradley P, Dunbrack RL Jr, Das R, Baker D, Kuhlman B, Kortemme T, Gray JJ (2017) The Rosetta all-atom energy function for macromolecular modeling and design. J Chem Theory Comput 13:3031–3048

4. Altun A, Yokoyama S, Morokuma K (2008a) Mechanism of spectral tuning going from retinal in vacuo to bovine rhodopsin and its mutants: multireference ab initio quantum mechanics/molecular mechanics studies. J Phys Chem B 112:16883–16890

5. Altun A, Yokoyama S, Morokuma K (2008b) Spectral tuning in visual pigments: an ONIOM (QM: MM) study on bovine rhodopsin and its mutants. J Phys Chem B 112:6814–6827

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2. Fluorescence of the Retinal Chromophore in Microbial and Animal Rhodopsins;International Journal of Molecular Sciences;2023-12-08

3. Automatic Rhodopsin Modeling with Multiple Protonation Microstates;The Journal of Physical Chemistry A;2023-10-25

4. Fluorescence Imaging of Cell Membrane Potential: From Relative Changes to Absolute Values;International Journal of Molecular Sciences;2023-01-26

5. Current Trends and Changes in Use of Membrane Molecular Dynamics Simulations within Academia and the Pharmaceutical Industry;Membranes;2023-01-24

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