EMDUniFrac: exact linear time computation of the UniFrac metric and identification of differentially abundant organisms

Author:

McClelland JasonORCID,Koslicki David

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Agricultural and Biological Sciences (miscellaneous),Modeling and Simulation

Reference31 articles.

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4. Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI et al (2010) Qiime allows analysis of high-throughput community sequencing data. Nat Methods 7(5):335–336

5. Cuturi M (2013) Sinkhorn distances: lightspeed computation of optimal transport. In: Advances in neural information processing systems 26, proceedings of the neural information processing systems conference 2013, pp 2292–2300

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