Inferring gene duplications, transfers and losses can be done in a discrete framework-Reference-Cited by-同舟云学术

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Inferring gene duplications, transfers and losses can be done in a discrete framework

Published:2015-09-04 Issue:7 Volume:72 Page:1811-1844
ISSN:0303-6812
Container-title:Journal of Mathematical Biology
language:en
Short-container-title:J. Math. Biol.

Author:

Ranwez Vincent,Scornavacca Celine,Doyon Jean-Philippe,Berry Vincent

Funder

French Agence Nationale de la Recherche (ANR)

Publisher

Springer Science and Business Media LLC

Subject

Applied Mathematics,Agricultural and Biological Sciences (miscellaneous),Modeling and Simulation

Link

http://link.springer.com/content/pdf/10.1007/s00285-015-0930-z.pdf

Reference51 articles.

1. Åkerborg Ö, Sennblad B, Arvestad L, Lagergren J (2009) Simultaneous Bayesian gene tree reconstruction and reconciliation analysis. Proc Natl Acad Sci USA 106(14):5714–5719

2. Arvestad L, Berglund AC, Lagergren J, Sennblad B (2003) Bayesian gene/species tree reconciliation and orthology analysis using MCMC. Bioinformatics 19 Suppl 1:7–15

3. Bansal MS, Alm EJ, Kellis M (2012) Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss. Bioinformatics 28(12):i283–i291. doi: 10.1093/bioinformatics/bts225

4. Berglund AC, Steffansson P, Betts MJ, Liberles DA (2006) Optimal gene trees from sequences and species trees using a soft interpretation of parsimony. J Mol Evol 63:240–250

5. Charleston M (1998) Jungles: a new solution to the host/parasite phylogeny reconciliation problem. Math Biosci 149(2):191–223. doi: 10.1016/S0025-5564(97)10012-8

Cited by 2 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Counting and sampling gene family evolutionary histories in the duplication-loss and duplication-loss-transfer models;Journal of Mathematical Biology;2020-02-15

2. Inferring gene-species assignments in the presence of horizontal gene transfer;IEEE/ACM Transactions on Computational Biology and Bioinformatics;2018

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