Configuring Concurrent Computation of Phylogenetic Partial Likelihoods: Accelerating Analyses Using the BEAGLE Library
Author:
Ayres Daniel L.,Cummings Michael P.
Publisher
Springer International Publishing
Reference11 articles.
1. Ayres, D.L., Cummings, M.P.: Heterogeneous hardware support in BEAGLE, a high-performance computing library for statistical phylogenetics. In: 2017 46th International Conference on Parallel Processing Workshops (ICPPW), Bristol, UK (2017, in press) 2. Ayres, D.L., Darling, A., Zwickl, D.J., Beerli, P., Holder, M.T., Lewis, P.O., Huelsenbeck, J.P., Ronquist, F., Swofford, D.L., Cummings, M.P., Rambaut, A., Suchard, M.A.: BEAGLE: an application programming interface and high-performance computing library for statistical phylogenetics. Syst. Biol. 61(1), 170–173 (2012). doi: 10.1093/sysbio/syr100 3. Bao, J., Xia, H., Zhou, J., Liu, X., Wang, G.: Efficient implementation of MrBayes on multi-GPU. Mol. Biol. Evol. 30(6), 1471 (2013). doi: 10.1093/molbev/mst043 4. Chase, M.W., Soltis, D.E., Olmstead, R.G., Morgan, D., Les, D.H., Mishler, B.D., Duvall, M.R., Price, R.A., Hills, H.G., Qiu, Y.L., Plunkett, G.M., Soltis, P.S., Swensen, S.M., Williams, S.E., Gadek, P.A., Quinn, C.J., Eguiarte, L.E., Golenberg, E., Learn Jr., G.H., Graham, S.W., Barrett, S.C.H., Dayanandan, S., Albert, V.A.: Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann. Mo. Bot. Gard. 80(3), 528–580 (1993). doi: 10.2307/2399846 5. Drummond, A.J., Suchard, M.A., Xie, D., Rambaut, A.: Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29, 1969–1973 (2012). doi: 10.1093/molbev/mss075
Cited by
7 articles.
订阅此论文施引文献
订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. CuCodeML: GPU-Accelerated CodeML for the Branch-Site Model in Phylogenetics;2020 IEEE Intl Conf on Parallel & Distributed Processing with Applications, Big Data & Cloud Computing, Sustainable Computing & Communications, Social Computing & Networking (ISPA/BDCloud/SocialCom/SustainCom);2020-12 2. CuPhylo: A CUDA Based Application Program Interface and Library for Phylogenetic Analysis;2019 IEEE Intl Conf on Parallel & Distributed Processing with Applications, Big Data & Cloud Computing, Sustainable Computing & Communications, Social Computing & Networking (ISPA/BDCloud/SocialCom/SustainCom);2019-12 3. BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics;Systematic Biology;2019-04-23 4. Parallel likelihood calculation for phylogenetic comparative models: The
SPLITT
C++ library;Methods in Ecology and Evolution;2019-01-08 5. High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE;Methods in Molecular Biology;2019
|
|