Massively Parallel Sequence Alignment with BLAST Through Work Distribution Implemented Using PCJ Library

Author:

Nowicki Marek,Bzhalava Davit,Bała Piotr

Publisher

Springer International Publishing

Reference13 articles.

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J.: Basic local alignment search tool. J. Mol. Biol. 215(3), 403–410 (1990)

2. Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., Lipman, D.J.: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25(17), 3389–3402 (1997)

3. Braun, R.C., Pedretti, K.T., Casavant, T.L., Scheetz, T.E., Birkett, C.L., Roberts, C.A.: Parallelization of local BLAST service on workstation clusters. Future Gener. Comput. Syst. 17(6), 745–754 (2001)

4. Cofer, H.: SGI® High Throughput Computing (HTC) Wrapper Program for Bioinformatics on SGI ICE™ and SGI UV™ Systems. Np: Silicon Graphics International (2012)

5. Chi, E.H.H., Shoop, E., Carlis, J., Retzel, E., Riedl, J.: Efficiency of shared-memory multiprocessors for a genetic sequence similarity search algorithm. Technical report, University of Minnesota, CS Department, vol. TR97-05 (1997)

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