Two-Level Parallelism to Accelerate Multiple Genome Comparisons

Author:

Torreno Oscar,Trelles Oswaldo

Publisher

Springer International Publishing

Reference9 articles.

1. Open MPI. https://www.open-mpi.org/

2. Darling, A.E., Mau, B., Perna, N.T.: progressivemauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 5(6), e11147 (2010)

3. Duvigneau, R., Kloczko, T., Praveen, C.: A three-level parallelization strategy for robust design in aerodynamics. In: Proceedings of 20th International Conference on Parallel Computational Fluid Dynamics, pp. 379–384 (2008)

4. Harris, R.: Improved pairwise alignment of genomic DNA. Ph.D. dissertation, The Pennsylvania State University (2007)

5. Kurtz, S., Phillippy, A., Delcher, A.L., Smoot, M., Shumway, M., Antonescu, C., Salzberg, S.L.: Versatile and open software for comparing large genomes. Genome Biol. 5(2), R12 (2004)

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