Optimal Offline Extraction of Irredundant Motif Bases

Author:

Apostolico Alberto,Tagliacollo Claudia

Publisher

Springer Berlin Heidelberg

Reference11 articles.

1. Apostolico, A., Galil, Z.: Pattern matching algorithms. Oxford University Press, New York (1997)

2. Apostolico, A., Parida, L.: ncremental paradigms of motif discovery. Journal of Computational Biology 11(1), 15–25 (2004)

3. Apostolico, A.: Pattern discovery and the algorithmics of surprise. Artificial Intelligence and Heuristic Methods for Bioinformatics, pp. 111–127 (2003)

4. Cole, R., Hariharan, R.: Verifying candidate matches in sparse and wildcard matching. In: STOC 2002. Proceedings of the thiry-fourth annual ACM symposium on Theory of computing, pp. 592–601 (2002)

5. Fischer, M.J., Paterson, M.S.: String matching and other products. In: Karp, R. (ed.) Proceedings of the SIAM-AMS Complexity of Computation, Providence, R.I. American Mathematical Society, pp. 113–125 (1974)

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1. Phylogeny Construction with Rigid Gapped Motifs;Journal of Computational Biology;2012-07

2. MADMX: A Strategy for Maximal Dense Motif Extraction;Journal of Computational Biology;2011-04

3. Classification of protein sequences by means of irredundant patterns;BMC Bioinformatics;2010-01

4. Optimal extraction of motif patterns in 2D;Information Processing Letters;2009-08

5. MADMX: A Novel Strategy for Maximal Dense Motif Extraction;Lecture Notes in Computer Science;2009

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