Classification of ligand molecules in PDB with graph match-based structural superposition-Reference-Cited by-同舟云学术

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Classification of ligand molecules in PDB with graph match-based structural superposition

Published:2016-12 Issue:4 Volume:17 Page:135-146
ISSN:1345-711X
Container-title:Journal of Structural and Functional Genomics
language:en
Short-container-title:J Struct Funct Genomics

Author:

Shionyu-Mitsuyama Clara,Hijikata Atsushi,Tsuji Toshiyuki,Shirai Tsuyoshi

Funder

Bioinformatics Research and Development of Japan Agency Science and Technology

Platform for Drug Design, Informatics, and Structural Lifescience

The Japan Agency for Medical Research and Development

Grants-in Aid for Science Research

Publisher

Springer Science and Business Media LLC

Subject

Genetics,General Medicine,Biochemistry,Structural Biology

Link

http://link.springer.com/content/pdf/10.1007/s10969-016-9209-x.pdf

Reference46 articles.

1. Dobson CM (2004) Chemical space and biology. Nature 432(7019):824–828. doi: 10.1038/nature03192

2. Schreiber SL (2005) Small molecules: the missing link in the central dogma. Nat Chem Biol 1(2):64–66. doi: 10.1038/nchembio0705-64

3. Saito M, Takemura N, Shirai T (2012) Classification of ligand molecules in PDB with fast heuristic graph match algorithm COMPLIG. J Mol Biol 424(5):379–390. doi: 10.1016/j.jmb.2012.10.001

4. Matsumoto T, Kinoshita T, Matsuzaka H, Nakai R, Kirii Y, Yokota K, Tada T (2012) Crystal structure of non-phosphorylated MAP2K6 in a putative auto-inhibition state. J Biochem 151(5):541–549. doi: 10.1093/jb/mvs023

5. Palencia A, Crepin T, Vu MT, Lincecum TL Jr, Martinis SA, Cusack S (2012) Structural dynamics of the aminoacylation and proofreading functional cycle of bacterial leucyl-tRNA synthetase. Nat Struct Mol Biol 19(7):677–684. doi: 10.1038/nsmb.2317

Cited by 1 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Chiral Graphs: Reduced Representations of Ligand Scaffolds for Stereoselective Biomolecular Recognition, Drug Design, and Enhanced Exploration of Chemical Structure Space;ChemMedChem;2019-03-21

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