A Model-Based Approach for Species Abundance Quantification Based on Shotgun Metagenomic Data-Reference-Cited by-同舟云学术

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A Model-Based Approach for Species Abundance Quantification Based on Shotgun Metagenomic Data

Published:2017-06 Issue:1 Volume:9 Page:13-27
ISSN:1867-1764
Container-title:Statistics in Biosciences
language:en
Short-container-title:Stat Biosci

Author:

Chen Eric Z.,Bushman Frederic D.,Li Hongzhe

Funder

National Cancer Institute

National Institute of General Medical Sciences

Publisher

Springer Science and Business Media LLC

Subject

Biochemistry, Genetics and Molecular Biology (miscellaneous),Statistics and Probability

Link

http://link.springer.com/article/10.1007/s12561-016-9148-x/fulltext.html

Reference20 articles.

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2. Cho I, Blaser MJ (2012) The human microbiome: at the interface of health and disease. Nat Rev Genet 13:260–270

3. Du Z, Hudcovic T, Mrazek J, Kozakova H, Srutkova D, Schwarzer M, Tlaskalova-Hogenova H, Kostovcik M, Kverka M (2015) Development of gut inflammation in mice colonized with mucosa-associated bacteria from patients with ulcerative colitis. Gut Pathog 7:1

4. Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M et al (2014) The treatment-naive microbiome in new-onset Crohns disease. Cell Host Microbe 15:382–392

5. Korem T, Zeevi D, Suez J, Weinberger A, Avnit-Sagi T, Pompan-Lotan M, Matot E, Jona G, Harmelin A, Cohen N, Sirota-Madi A, Thaiss CA, Pevsner-Fischer M, Sorek R, Xavier R, Elinav E, Segal E (2015) Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples. Science 349:1101–1106

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1. Implications of Error-Prone Long-Read Whole-Genome Shotgun Sequencing on Characterizing Reference Microbiomes;iScience;2020-06

2. Implications of error-prone long-read whole-genome shotgun sequencing on characterizing reference microbiomes;2020-03-05

3. Horizontal Gene Transfer to a Defensive Symbiont with a Reduced Genome in a Multipartite Beetle Microbiome;mBio;2020-02-25

4. Whole genome sequencing and metagenomics for outbreak investigation, source attribution and risk assessment of food‐borne microorganisms;EFSA Journal;2019-12

5. Horizontal gene transfer to a defensive symbiont with a reduced genome amongst a multipartite beetle microbiome;2019-09-24

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