A Two-Stage Procedure for the Removal of Batch Effects in Microarray Studies

Author:

Giordan Marco

Publisher

Springer Science and Business Media LLC

Subject

Biochemistry, Genetics and Molecular Biology (miscellaneous),Statistics and Probability

Reference23 articles.

1. Barnett S (1990) Matrices: methods and applications. Oxford University Press, Oxford

2. Benito M, Parker J, Du Q, Xiang D, Perou CM, Marron JS (2004) Adjustment of systematic microarray data biases. Bioinformatics 20(1):105–114. doi: 10.1093/bioinformatics/btg385

3. Breiman L (1996) Bagging predictors. Mach Learn 24(2):123–140. doi: 10.1023/A:1018054314350

4. Chen C, Grennan K, Badner J, Zhang D, Gershon E, Jin L, Liu C (2011) Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods. PLoS ONE 6(2):e17238. 10.1371/journal.pone.0017238

5. Davis S, Meltzer PS (2007) GEOquery: a bridge between the Gene Expression Omnibus (GEO) and bioconductor. Bioinformatics 23(14):1846–1847. doi: 10.1093/bioinformatics/btm254

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