UMI-Varcal: A Low-Frequency Variant Caller for UMI-Tagged Paired-End Sequencing Data-Reference-Cited by-同舟云学术

UMI-Varcal: A Low-Frequency Variant Caller for UMI-Tagged Paired-End Sequencing Data

Published:2022 Issue: Volume: Page:235-245
ISSN:1064-3745
Container-title:Variant Calling
language:
Short-container-title:

Author:

Sater Vincent,Viailly Pierre-Julien,Lecroq Thierry,Prieur-Gaston Élise,Bohers Élodie,Viennot Mathieu,Ruminy Philippe,Dauchel Hélène,Vera Pierre,Jardin Fabrice

Publisher

Springer US

Link

https://link.springer.com/content/pdf/10.1007/978-1-0716-2293-3_14

Reference12 articles.

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3. Schmitt MW, Kennedy SR, Salk JJ, Fox EJ, Hiatt JB, Loeb LA (2012) Detection of ultra-rare mutations by next-generation sequencing. Proc Natl Acad Sci U S A 109(36):14508–14513

4. Sater V, Viailly P-J, Lecroq T, Prieur-Gaston E, Bohers E, Viennot M, Ruminy P, Dauchel H, Vera P, Jardin F (2020) UMI-VarCal: a new UMI-based variant caller that efficiently improves low-frequency variant detection in paired-end sequencing NGS libraries. Bioinformatics 36:2718–2724. https://doi.org/10.1093/bioinformatics/btaa053

5. Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics 25:2078–2079. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723002/. https://doi.org/10.1093/bioinformatics/btp352

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