RNA Secondary Structure Alteration Caused by Single Nucleotide Variants
Author:
Publisher
Springer US
Link
https://link.springer.com/content/pdf/10.1007/978-1-0716-2768-6_7
Reference22 articles.
1. Mathews DH, Disney MD, Childs JL, Schroeder SJ, Zuker M, Turner DH (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc Natl Acad Sci U S A 101:7287–7292. https://doi.org/10.1073/pnas.0401799101
2. Serganov A, Nudler E (2013) A decade of riboswitches. Cell 152:17–24. https://doi.org/10.1016/j.cell.2012.12.024
3. Halvorsen M, Martin JS, Broadaway S, Laederach A (2010) Disease-associated mutations that alter the RNA structural ensemble. PLoS Genet 6:e1001074. https://doi.org/10.1371/journal.pgen.1001074
4. Shatoff E, Bundschuh R (2020) Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures. PLoS Comput Biol 16:e1007852. https://doi.org/10.1371/journal.pcbi.1007852
5. He F, Wei R, Zhou Z, Huang L, Wang Y, Tang J, Zou Y, Shi L, Gu X, Davis MJ, Su Z (2019) Integrative analysis of somatic mutations in non-coding regions altering RNA secondary structures in cancer genomes. Sci Rep 9:8205. https://doi.org/10.1038/s41598-019-44489-5
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