Genomic Pipeline for Analysis of Mutational Events in Bacteria
Author:
Publisher
Springer US
Link
https://link.springer.com/content/pdf/10.1007/978-1-0716-4100-2_15
Reference17 articles.
1. D’Souza G, Kost C (2016) Experimental evolution of metabolic dependency in bacteria. PLoS Genet 12:e1006364. https://doi.org/10.1371/journal.pgen.1006364
2. Marciano DC, Wang C, Hsu T-K, Bourquard T, Atri B, Nehring RB, Abel NS, Bowling EA, Chen TJ, Lurie PD, Katsonis P, Rosenberg SM, Herman C, Lichtarge O (2022) Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli. Nat Commun 13:3189. https://doi.org/10.1038/s41467-022-30889-1
3. Douarre P-E, Sévellec Y, Le Grandois P, Soumet C, Bridier A, Roussel S (2022) FepR as a central genetic target in the adaptation to quaternary ammonium compounds and cross-resistance to ciprofloxacin in Listeria monocytogenes. Front Microbiol 13:864576. https://doi.org/10.3389/fmicb.2022.864576
4. Charron R, Lemée P, Huguet A, Minlong O, Boulanger M, Houée P, Soumet C, Briandet R, Bridier A (2023) Polyhexamethylene biguanide promotes adaptive cross-resistance to gentamicin in Escherichia coli biofilms. Front Cell Infect Microbiol 13:1324991. https://doi.org/10.3389/fcimb.2023.1324991
5. Weissman JL, Hou S, Fuhrman JA (2021) Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns. Proc Natl Acad Sci USA 118:e2016810118. https://doi.org/10.1073/pnas.2016810118
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