Atomistic Molecular Dynamics Simulations of DNA in Complex 3D Arrangements for Comparison with Lower Resolution Structural Experiments
Author:
Publisher
Springer US
Link
https://link.springer.com/content/pdf/10.1007/978-1-0716-2221-6_8
Reference49 articles.
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2. Fogg JM, Randall GL, Pettitt BM et al (2012) Bullied no more: when and how DNA shoves proteins around. Q Rev Biophys 45:257–299
3. Pyne ALB, Noy A, Main KHS et al (2021) Base-pair resolution analysis of the effect of supercoiling on DNA flexibility and major groove recognition by triplex-forming oligonucleotides. Nat Commun 12:1–12
4. Noy A, Maxwell A, Harris SA (2017) Interference between triplex and protein binding to distal sites on supercoiled DNA. Biophys J 112:523–531
5. D’Annessa I, Coletta A, Sutthibutpong T et al (2014) Simulations of DNA topoisomerase 1B bound to supercoiled DNA reveal changes in the flexibility pattern of the enzyme and a secondary protein-DNA binding site. Nucleic Acids Res 42:9304–9312
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