Long-Read Metagenomics and CAZyme Discovery

Author:

Ferrillo Alessandra,Kobel Carl Mathias,Vera-Ponce de León Arturo,La Rosa Sabina Leanti,Kunath Benoit Josef,Pope Phillip Byron,Hagen Live Heldal

Publisher

Springer US

Reference87 articles.

1. La Rosa SL, Ostrowski MP, Vera-Ponce de León A, McKee LS, Larsbrink J, Eijsink VG, Lowe EC, Martens EC, Pope PB (2022) Glycan processing in gut microbiomes. Curr Opin Microbiol 67:102143. https://doi.org/10.1016/j.mib.2022.102143

2. Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernandez M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR (2007) Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450(7169):560–565. https://doi.org/10.1038/nature06269

3. Liu N, Li H, Chevrette MG, Zhang L, Cao L, Zhou H, Zhou X, Zhou Z, Pope PB, Currie CR, Huang Y, Wang Q (2019) Functional metagenomics reveals abundant polysaccharide-degrading gene clusters and cellobiose utilization pathways within gut microbiota of a wood-feeding higher termite. ISME J 13(1):104–117. https://doi.org/10.1038/s41396-018-0255-1

4. Hagen LH, Brooke CG, Shaw CA, Norbeck AD, Piao H, Arntzen M, Olson HM, Copeland A, Isern N, Shukla A, Roux S, Lombard V, Henrissat B, O’Malley MA, Grigoriev IV, Tringe SG, Mackie RI, Pasa-Tolic L, Pope PB, Hess M (2021) Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. ISME J 15(2):421–434. https://doi.org/10.1038/s41396-020-00769-x

5. Naas AE, Solden LM, Norbeck AD, Brewer H, Hagen LH, Heggenes IM, McHardy AC, Mackie RI, Paša-Tolić L, Arntzen M, Eijsink VGH, Koropatkin NM, Hess M, Wrighton KC, Pope PB (2018) “Candidatus Paraporphyromonas polyenzymogenes” encodes multi-modular cellulases linked to the type IX secretion system. Microbiome 6(1):44. https://doi.org/10.1186/s40168-018-0421-8

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