Detecting Somatic Insertions/Deletions (Indels) Using Tumor RNA-Seq Data
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Publisher
Springer US
Link
https://link.springer.com/content/pdf/10.1007/978-1-0716-3886-6_13
Reference12 articles.
1. Piskol R, Ramaswami G, Li JB (2013) Reliable identification of genomic variants from RNA-seq data. Am J Hum Genet 93:641–651. https://doi.org/10.1016/j.ajhg.2013.08.008
2. Mosen-Ansorena D (2019) Identification of mutated cancer driver genes in unpaired RNA-Seq samples. Methods Mol Biol 1878:95–108. https://doi.org/10.1007/978-1-4939-8868-6_5
3. Coudray A, Battenhouse AM, Bucher P, Iyer VR (2018) Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data. PeerJ. https://doi.org/10.7717/peerj.5362
4. Sun Z, Bhagwate A, Prodduturi N, Yang P, Kocher JA (2017) Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations. Brief Bioinform 18:973–983. https://doi.org/10.1093/bib/bbw069
5. Hagiwara K, Ding L, Edmonson MN, Rice SV, Newman S, Easton J, Dai J, Meshinchi S, Ries RE, Rusch M, Zhang J (2020) RNAIndel: discovering somatic coding indels from tumor RNA-Seq data. Bioinformatics 36:1382–1390. https://doi.org/10.1093/bioinformatics/btz753
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