How Parameters Influence Shape-Directed Predictions
Author:
Publisher
Springer US
Link
https://link.springer.com/content/pdf/10.1007/978-1-0716-3519-3_5
Reference30 articles.
1. Mathews DH, Sabina J, Zuker M, Turner DH (1999) Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J Mol Biol 288(5):911–940
2. Turner DH, Mathews DH (2009) NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure. Nucleic Acids Res 38:D280–D282
3. Zuker M, Stiegler P (1981) Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res 9(1):133–148
4. Deigan KE, Li TW, Mathews DH, Weeks KM (2009) Accurate SHAPE-directed RNA structure determination. Proc Natl Acad Sci 106(1):97–102
5. Sükösd Z, Swenson MS, Kjems J, Heitsch CE (2013) Evaluating the accuracy of SHAPE-directed RNA secondary structure predictions. Nucleic Acids Res 41(5):2807–2816
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