Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé-Reference-Cited by-同舟云学术

Large-Scale Multiple Sequence Alignment and Tree Estimation Using SATé

Published:2013-08-23 Issue: Volume: Page:219-244
ISSN:1064-3745
Container-title:Methods in Molecular Biology
language:
Short-container-title:

Author:

Liu Kevin,Warnow Tandy

Publisher

Humana Press

Link

http://link.springer.com/content/pdf/10.1007/978-1-62703-646-7_15

Reference83 articles.

1. Kemena C, Notredame C (2009) Upcoming challenges for multiple sequence alignment methods in the high-throughput era. Bioinformatics 25:2455–2465

2. Nelesen S, Liu K, Zhao D et al (2008) The effect of the guide tree on multiple sequence alignments and subsequent phylogenetic analyses. Pac Symp Biocomput 2008:25–36

3. Liu K, Linder CR, Warnow T (2010) Multiple sequence alignment: a major challenge to large-scale phylogenetics. PLoS Curr 2, RRN1198

4. Wang L-S, Leebens-Mack J, Wall PK, Beckman K, de Pamphilis CW, Warnow T (2011) The impact of multiple protein sequence alignment on phylogenetic estimation. IEEE Trans Comput Biol Bioinform 8:1108–1119

5. Cantarel BL, Morrison HG, Pearson W (2006) Exploring the relationship between sequence similarity and accurate phylogenetic trees. Mol Biol Evol 11:2090–100

Cited by 20 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. The Cambrian cirratuliform Iotuba denotes an early annelid radiation;Proceedings of the Royal Society B: Biological Sciences;2023-02

2. cpxDeepMSA: A Deep Cascade Algorithm for Constructing Multiple Sequence Alignments of Protein–Protein Interactions;International Journal of Molecular Sciences;2022-07-30

3. Gone with Gondwana: Amphipod diversification in freshwaters followed the breakup of the supercontinent;Molecular Phylogenetics and Evolution;2022-06

4. PhyloFunDB: A Pipeline to Create and Update Functional Gene Taxonomic Databases;Microorganisms;2022-05-25

5. Phylogenetic analyses of a new freshwater amphipod reveal polyphyly within the Holarctic family Crangonyctidae, with revision of the genus Synurella;Zoological Journal of the Linnean Society;2021-12-23