Exploration of the activation pathway of Δα-Chymotrypsin with molecular dynamics simulations and correlation with kinetic experiments-Reference-Cited by-同舟云学术

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Exploration of the activation pathway of Δα-Chymotrypsin with molecular dynamics simulations and correlation with kinetic experiments

Published:2008-08-27 Issue:1 Volume:38 Page:13-23
ISSN:0175-7571
Container-title:European Biophysics Journal
language:en
Short-container-title:Eur Biophys J

Author:

Mátrai Janka,Jonckheer Abel,Joris Eddy,Krüger Peter,Carpenter Eric,Tuszynski Jack,De Maeyer Marc,Engelborghs Yves

Publisher

Springer Science and Business Media LLC

Subject

General Medicine,Biophysics

Link

http://link.springer.com/content/pdf/10.1007/s00249-008-0348-2.pdf

Reference45 articles.

1. Berendsen HJC, Postma JPM, van Gunsteren WF, Hermans J (1981) Interaction models for water in relation to protein hydration. In: Pullman B (ed) Intermolecular forces. D. Reidel Publishing Company, Dordrecht, pp 331–342

2. Bernstein HJ (2000) Recent changes to RasMol, recombining the variants. Trends Biochem Sci 25:453–455

3. Bernstein FC, Koetzle TF, Williams GJB, Meyer EF Jr, Brice MD, Rodgers JR, Kennard O, Shimanouchi T, Tasumi M (1977) The protein data bank: a computer-based archival file for macromolecular structures. J Mol Biol 112:535–542

4. De Maeyer M, Desmet J, Lasters I (1997) All in one: a highly detailed rotamer library improves both accuracy and speed in the modelling of sidechains by dead-end elimination. Fold Des 2:53–66

5. DeLano (2002) The PyMOL Molecular Graphics System

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3. Insights into conformational changes of procarboxypeptidase A and B from simulations: a plausible explanation for different intrinsic activity;Theoretical Chemistry Accounts;2012-05

4. Microfabricated arrays of cylindrical wells facilitate single-molecule enzymology of α-chymotrypsin;Biotechnology Progress;2009-07

5. Comparison of Three Perturbation Molecular Dynamics Methods for Modeling Conformational Transitions;Journal of Chemical Theory and Computation;2009-04-09

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