Conformational Sampling in Structure Prediction and Refinement with Atomistic and Coarse-Grained Models
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Publisher
Springer New York
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http://link.springer.com/content/pdf/10.1007/978-1-4419-6889-0_4.pdf
Reference52 articles.
1. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyal IN, Bourne PE (2000) The protein data bank. Nucleic Acids Res 28:235–242
2. Best RB, Buchete NV, Hummer G (2008) Are current molecular dynamics force fields too helical? Biophys J 95:L7–L9
3. Bonneau R, Baker D (2001) Ab initio protein structure prediction: progress and prospects. Ann Rev Biophys Biomol Struct 30:173–189
4. Bower MJ, Cohen FE, Dunbrack RL (1997) Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool. J Mol Biol 267:1268–1282
5. Brooks BR, Brooks III CL, Mackerell Jr AD, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor RW, Post CB, Pu JZ, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York DM and Karplus M (2009). CHARMM: the biomolecular simulation program. J Comput Chem 30:1545–1614
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