A large-scale evaluation of algorithms to calculate average nucleotide identity-Reference-Cited by-同舟云学术

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A large-scale evaluation of algorithms to calculate average nucleotide identity

Published:2017-02-15 Issue:10 Volume:110 Page:1281-1286
ISSN:0003-6072
Container-title:Antonie van Leeuwenhoek
language:en
Short-container-title:Antonie van Leeuwenhoek

Author:

Yoon Seok-Hwan,Ha Sung-min,Lim Jeongmin,Kwon Soonjae,Chun Jongsik

Funder

Ministry of Agriculture, Food and Rural Affairs (KR)

Publisher

Springer Science and Business Media LLC

Subject

Molecular Biology,General Medicine,Microbiology

Link

http://link.springer.com/article/10.1007/s10482-017-0844-4/fulltext.html

Reference9 articles.

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410. doi: 10.1016/S0022-2836(05)80360-2

2. Chun J, Rainey FA (2014) Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea. Int J Syst Evol Microbiol 64:316–324. doi: 10.1099/ijs.0.054171-0

3. Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26:2460–2461. doi: 10.1093/bioinformatics/btq461

4. Goris J, Konstantinidis KT, Klappenbach JA, Coenye T, Vandamme P, Tiedje JM (2007) DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. Int J Syst Evol Microbiol 57:81–91. doi: 10.1099/ijs.0.64483-0

5. Kim M, Oh HS, Park SC, Chun J (2014) Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 64:346–351. doi: 10.1099/ijs.0.059774-0

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