Fully sequencing the cassava full-length cDNA library reveals unannotated transcript structures and alternative splicing events in regions with a high density of single nucleotide variations, insertions–deletions, and heterozygous sequences
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Published:2023-04-04
Issue:1-2
Volume:112
Page:33-45
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ISSN:0167-4412
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Container-title:Plant Molecular Biology
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language:en
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Short-container-title:Plant Mol Biol
Author:
Ezoe Akihiro, Iuchi Satoshi, Sakurai Tetsuya, Aso Yukie, Tokunaga Hiroki, Vu Anh Thu, Utsumi Yoshinori, Takahashi Satoshi, Tanaka Maho, Ishida Junko, Ishitani Manabu, Seki MotoakiORCID
Funder
Japan Science and Technology Corporation
Publisher
Springer Science and Business Media LLC
Subject
Plant Science,Genetics,Agronomy and Crop Science,General Medicine
Reference55 articles.
1. Altschul S (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402. https://doi.org/10.1093/nar/25.17.3389 2. Arendsee ZW, Li L, Wurtele ES (2014) Coming of age: orphan genes in plants. Trends Plant Sci 19:698–708. https://doi.org/10.1016/j.tplants.2014.07.003 3. Bateman A, Martin M-J, Orchard S, Magrane M, Agivetova R, Ahmad S, Alpi E, Bowler-Barnett EH, Britto R, Bursteinas B, Bye-A-Jee H, Coetzee R, Cukura A, Da Silva A, Denny P, Dogan T, Ebenezer T, Fan J, Castro LG, Garmiri P, Georghiou G, Gonzales L, Hatton-Ellis E, Hussein A, Ignatchenko A, Insana G, Ishtiaq R, Jokinen P, Joshi V, Jyothi D, Lock A, Lopez R, Luciani A, Luo J, Lussi Y, MacDougall A, Madeira F, Mahmoudy M, Menchi M, Mishra A, Moulang K, Nightingale A, Oliveira CS, Pundir S, Qi G, Raj S, Rice D, Lopez MR, Saidi R, Sampson J, Sawford T, Speretta E, Turner E, Tyagi N, Vasudev P, Volynkin V, Warner K, Watkins X, Zaru R, Zellner H, Bridge A, Poux S, Redaschi N, Aimo L, Argoud-Puy G, Auchincloss A, Axelsen K, Bansal P, Baratin D, Blatter M-C, Bolleman J, Boutet E, Breuza L, Casals-Casas C, de Castro E, Echioukh KC, Coudert E, Cuche B, Doche M, Dornevil D, Estreicher A, Famiglietti ML, Feuermann M, Gasteiger E, Gehant S, Gerritsen V, Gos A, Gruaz-Gumowski N, Hinz U, Hulo C, Hyka-Nouspikel N, Jungo F, Keller G, Kerhornou A, Lara V, Le Mercier P, Lieberherr D, Lombardot T, Martin X, Masson P, Morgat A, Neto TB, Paesano S, Pedruzzi I, Pilbout S, Pourcel L, Pozzato M, Pruess M, Rivoire C, Sigrist C, Sonesson K, Stutz A, Sundaram S, Tognolli M, Verbregue L, Wu CH, Arighi CN, Arminski L, Chen C, Chen Y, Garavelli JS, Huang H, Laiho K, McGarvey P, Natale DA, Ross K, Vinayaka CR, Wang Q, Wang Y, Yeh L-S, Zhang J, Ruch P, Teodoro D (2021) UniProt: the universal protein knowledgebase in 2021. Nucleic Acids Res 49:D480–D489. https://doi.org/10.1093/nar/gkaa1100 4. Ceballos H, Iglesias CA, Pérez JC, Dixon AGO (2004) Cassava breeding: opportunities and challenges. Plant Mol Biol 56:503–516. https://doi.org/10.1007/s11103-004-5010-5 5. Cheng C, Krishnakumar V, Chan AP, Thibaud-Nissen F, Schobel S, Town CD (2017) Araport11: a complete reannotation of the Arabidopsis thaliana reference genome. Plant J 89:789–804. https://doi.org/10.1111/tpj.13415
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