Implementation of Nussinov’s RNA Folding Using the Kokkos Library
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Publisher
Springer International Publishing
Link
https://link.springer.com/content/pdf/10.1007/978-3-030-81523-3_30
Reference11 articles.
1. Chang, D.J., Kimmer, C., Ouyang, M.: Accelerating the Nussinov RNA folding algorithm with CUDA/GPU. In: The 10th IEEE International Symposium on Signal Processing and Information Technology, pp. 120–125 (2010). https://doi.org/10.1109/ISSPIT.2010.5711746
2. Edwards, H.C., Trott, C.R., Sunderland, D.: Kokkos: enabling manycore performance portability through polymorphic memory access patterns. J. Parallel Distrib. Comput. 74(12), 3202–3216 (2014). https://doi.org/10.1016/j.jpdc.2014.07.003. http://www.sciencedirect.com/science/article/pii/S0743731514001257. Domain-Specific Languages and High-Level Frameworks for High-Performance Computing
3. Jacob, A., Buhler, J., Chamberlain, R.D.: Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs. In: Proceedings of the 2008 International Conference on Application-Specific Systems, Architectures and Processors, ASAP ’08, pp. 191–196. IEEE Computer Society, Washington, DC (2008). https://doi.org/10.1109/ASAP.2008.4580177
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